Chromosome 1 open reading frame 41 Evolution: Difference between revisions

Latest revision as of 06:26, 16 June 2009

Figure 1: BLAST result

H-(2x)-W-(29x)-R-(2x)-S-(2x)-E residues critical for galactose binding site

Figure 2: Conserved region of alpha B domain.

Figure 3: Residues involved in binding of Ca2+ and possible binding site.

Figure 4: Phylogenetic tree of c1orf41 with its homologues. Red is marine eukaryote, blue is amphibian and green is terrestrial eukaryotes.

Figure 5: Phylogenetic tree with bootstrap values

@@ Line 1: / Line 1: @@
-== Blast ==
+[[Image:BLAST.png|centre|framed|'''Figure 1:''' BLAST result]]
-[[Image:BLAST.png]]
-The above shows the result from BLASTP search. The sequences of these proteins are aligned to observe the conserved regions.
+H-(2x)-W-(29x)-R-(2x)-S-(2x)-E residues critical for galactose binding site
-== ClustalX ==
-Multiple sequence alignment with all of the 27 sequences obtained from BLAST is shown below:
+[[Image:Msa16.png|centre|framed|'''Figure 2:''' Conserved region of alpha B domain.]]
-[[Image:Platypus.png]]
+[[Image:Msa17.png|centre|framed|'''Figure 3:''' Residues involved in binding of Ca2+ and possible binding site.]]
-The sequence of platypus, urchin_156 and urchin_159 was removed due to poor alignment. Besides that, the sequence for g.alga_fap was removed as it was a subsequence of g.alga_itp25.
+[[Image:Treecolour.png|centre|framed|'''Figure 4:''' Phylogenetic tree of c1orf41 with its homologues. Red is marine eukaryote, blue is amphibian and green is terrestrial eukaryotes.]]
+[[Image:Tree.png|centre|framed|'''Figure 5:''' Phylogenetic tree with bootstrap values]]
-[[Image:Msafinal.png]]
-== Phylogenetic Tree ==
+[[Chromosome 1 open reading frame 41 Function|Next]]
-After obtaining the multiple sequence alignment, phylogenetic tree was construct based on the result from multiple sequence alignment. Bootstrap values are shown on each branch.
-[[Image:Tree_final.png]]