Protein Function

Return to Library

Also see Discussion

Not sure if this is the same link..?

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAH33759.1

Link to BLAST and List of Conservation <Sorted by organism match not blast match>

http://www.ncbi.nlm.nih.gov/sutils/blink.cgi?pid=23510352&tax=0&org=0&pdb=0&sort=1&cut=100&all=0

Link to BLAST Conserved Domain

http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?ascbin=2&maxaln=10&seltype=3&uid=47844&aln=6,0,8,11,11,22,72,86,94,49,135,145,21,157,166,23,180,200,21&querygi=15988381&querynm=1h6ka(query)

Link to Pfam Family MIF4G Domain

http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02854

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RESULTS

Link to LOCATE Blastp

http://locate.imb.uq.edu.au/cgi-bin/blast_scldb.cgi

LOCATE 2 - Mouse

http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=202601

http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=202602

Paip - http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=206042

STRING

http://string.embl.de/newstring_cgi/show_link_summary.pl

http://string.embl.de/newstring_cgi/show_link_summary.pl -

The second round of string was performed by doing a name search on eIF and selecting eIF-4-gamma 3 as the closest match. There are possibly other matches. This is one protein that is part of the entire eIF4G domain (or the eIF domain??).

PROFUNC

http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay65&code=075103

PROKNOW (without FSSP files)

Table Link - http://www.doe-mbi.ucla.edu/Services/ProKnow/seq/upload/1756957907/master_table.html

http://www.doe-mbi.ucla.edu/Services/ProKnow/display_gograph.php?shape=box&edgecolor=blue&width=0.2&height=0.01&fontsize=10&page=50,50&size=50,50&db=0&geneont=0003723:1.0000

http://www.doe-mbi.ucla.edu/Services/ProKnow/seq/upload/1756957907/image/display_image_process.html

GO Number for Molecular Function: http://www.doe-mbi.ucla.edu/Services/ProKnow/get_ontology.php?go=0003723

Ontology Children for GO number 0003723: http://www.gramene.org/db/ontology/search_term?id=GO:0003723

GO Number for a Biological Function EXAMPLE ONLY - as all have the same clue no and evidence: http://www.doe-mbi.ucla.edu/Services/ProKnow/get_ontology.php?go=0006364

Ontology Children for GO number 0006364: http://www.gramene.org/db/ontology/search_term?id=GO:0006364

PDB

These results were obtained by searching with the most likely structural match sequence - 1hu3. Sequence was obtained originally from a homology blast search and is found in Danio Renio (Zebra Fish).

http://www.rcsb.org/pdb/explore/explore.do?structureId=1HU3