Protein Function: Difference between revisions
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Return to [[Library]] | |||
'''Also see Discussion''' | '''Also see Discussion''' | ||
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http://string.embl.de/newstring_cgi/show_link_summary.pl | http://string.embl.de/newstring_cgi/show_link_summary.pl | ||
http://string.embl.de/newstring_cgi/show_link_summary.pl - | |||
The second round of string was performed by doing a name search on eIF and selecting eIF-4-gamma 3 as the closest match. There are possibly other matches. This is one protein that is part of the entire eIF4G domain (or the eIF domain??). | |||
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Table Link - http://www.doe-mbi.ucla.edu/Services/ProKnow/seq/upload/1756957907/master_table.html | Table Link - http://www.doe-mbi.ucla.edu/Services/ProKnow/seq/upload/1756957907/master_table.html | ||
http://www.doe-mbi.ucla.edu/Services/ProKnow/display_gograph.php?shape=box&edgecolor=blue&width=0.2&height=0.01&fontsize=10&page=50,50&size=50,50&db=0&geneont=0003723:1.0000 | |||
http://www.doe-mbi.ucla.edu/Services/ProKnow/ | http://www.doe-mbi.ucla.edu/Services/ProKnow/seq/upload/1756957907/image/display_image_process.html | ||
GO Number for Molecular Function: | |||
http://www.doe-mbi.ucla.edu/Services/ProKnow/get_ontology.php?go=0003723 | |||
Ontology Children for GO number 0003723: | |||
http://www.gramene.org/db/ontology/search_term?id=GO:0003723 | |||
GO Number for a Biological Function EXAMPLE ONLY - as all have the same clue no and evidence: | |||
http://www.doe-mbi.ucla.edu/Services/ProKnow/get_ontology.php?go=0006364 | |||
Ontology Children for GO number 0006364: http://www.gramene.org/db/ontology/search_term?id=GO:0006364 | |||
PDB | |||
These results were obtained by searching with the most likely structural match sequence - 1hu3. Sequence was obtained originally from a homology blast search and is found in Danio Renio (Zebra Fish). | |||
http://www.rcsb.org/pdb/explore/explore.do?structureId=1HU3 | |||
http://www. |
Latest revision as of 09:31, 10 June 2007
Return to Library
Also see Discussion
Not sure if this is the same link..?
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAH33759.1
Link to BLAST and List of Conservation <Sorted by organism match not blast match>
http://www.ncbi.nlm.nih.gov/sutils/blink.cgi?pid=23510352&tax=0&org=0&pdb=0&sort=1&cut=100&all=0
Link to BLAST Conserved Domain
Link to Pfam Family MIF4G Domain
http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02854
RESULTS
Link to LOCATE Blastp
http://locate.imb.uq.edu.au/cgi-bin/blast_scldb.cgi
LOCATE 2 - Mouse
http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=202601
http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=202602
Paip - http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=206042
STRING
http://string.embl.de/newstring_cgi/show_link_summary.pl
http://string.embl.de/newstring_cgi/show_link_summary.pl -
The second round of string was performed by doing a name search on eIF and selecting eIF-4-gamma 3 as the closest match. There are possibly other matches. This is one protein that is part of the entire eIF4G domain (or the eIF domain??).
PROFUNC
PROKNOW (without FSSP files)
Table Link - http://www.doe-mbi.ucla.edu/Services/ProKnow/seq/upload/1756957907/master_table.html
http://www.doe-mbi.ucla.edu/Services/ProKnow/seq/upload/1756957907/image/display_image_process.html
GO Number for Molecular Function: http://www.doe-mbi.ucla.edu/Services/ProKnow/get_ontology.php?go=0003723
Ontology Children for GO number 0003723: http://www.gramene.org/db/ontology/search_term?id=GO:0003723
GO Number for a Biological Function EXAMPLE ONLY - as all have the same clue no and evidence: http://www.doe-mbi.ucla.edu/Services/ProKnow/get_ontology.php?go=0006364
Ontology Children for GO number 0006364: http://www.gramene.org/db/ontology/search_term?id=GO:0006364
PDB
These results were obtained by searching with the most likely structural match sequence - 1hu3. Sequence was obtained originally from a homology blast search and is found in Danio Renio (Zebra Fish).