Results - 2gqnA: Difference between revisions

From MDWiki
Jump to navigationJump to search
No edit summary
No edit summary
Line 1: Line 1:
Structure of tRNA isopentenyltransferase
'''Structure of tRNA isopentenyltransferase'''
From the PDBsum of 2QGNA, it a single strand protein with


Localisation Expression of tRNA isopentenyltransferase


Generally, this enzyme is expressed in all tissue types since it is important that translation of proteins in these cells occur correctly. This supports the evidence that specifically, it is highly expressed in adipose tissues as well as oocytes. Relatively high amounts of this enzyme is expressed in prostate, adrenal gland, B-cells and trachea.
'''Localisation Expression of tRNA isopentenyltransferase'''
 
Generally, this enzyme is expressed in all tissue types since it is important that functional protein are synthesized in each of these tissues. Specifically, it is highly expressed in adipose tissues as well as oocytes. Relatively high amounts of this enzyme is expressed in prostate, adrenal gland, B-cells and trachea. The reason why tRNA-IPT are at higher concentrations in these tissues may reflect  higher levels of protein synthesis.
 
Using the LOCATE program, it is found that this enzyme is concentrated in the nucleus of cells as a soluble, non-secreted protein in humans. As for mouse, this enzymes are found in the cytoplasm and mitochondria. 
 


[[Image:geneatlas mouse.png]]
[[Image:geneatlas mouse.png]]


Domain and Structural Analysis


Structural Elements and Functional Binding Sites of tRNA isopentenyltransferase
'''Domain and Structural Analysis'''
 
 
 
 
'''Structural Elements and Functional Binding Sites of tRNA isopentenyltransferase'''
 


-Residue Flexibility  
-Residue Flexibility  

Revision as of 05:17, 27 May 2008

Structure of tRNA isopentenyltransferase


Localisation Expression of tRNA isopentenyltransferase

Generally, this enzyme is expressed in all tissue types since it is important that functional protein are synthesized in each of these tissues. Specifically, it is highly expressed in adipose tissues as well as oocytes. Relatively high amounts of this enzyme is expressed in prostate, adrenal gland, B-cells and trachea. The reason why tRNA-IPT are at higher concentrations in these tissues may reflect higher levels of protein synthesis.

Using the LOCATE program, it is found that this enzyme is concentrated in the nucleus of cells as a soluble, non-secreted protein in humans. As for mouse, this enzymes are found in the cytoplasm and mitochondria.


Geneatlas mouse.png


Domain and Structural Analysis



Structural Elements and Functional Binding Sites of tRNA isopentenyltransferase


-Residue Flexibility -Hydrophobicity LOCATE results show that this enzyme is soluble in nature; although a small part of the protein terminus is hydrophobic.

-Functional Sites Found By Pattern Search

Table 1 

-Functional Sites Found by Sequence Conservation In Structurally Related Proteins -Functional Sites Found by Structure Conservation In Structurally Related Proteins -Multiple Sequence Alignment

Tree