Software: Difference between revisions
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==Software on the workstations== | ==Software on the workstations== | ||
Packages tagged src will be added to a local yum repository on compbio | |||
'''bold''' = newly added | '''bold''' = newly added | ||
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{| border="1" | {| border="1" | ||
|- | |- | ||
! | !Package name | ||
! | !Installation state | ||
!Notes | !Notes | ||
|- | |- | ||
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|'''apbs''' | |'''apbs''' | ||
|N | |N | ||
| | |src | ||
|- | |- | ||
|molmol | |molmol | ||
| Line 53: | Line 52: | ||
|xplor-nih | |xplor-nih | ||
|N | |N | ||
| | |binary only | ||
|- | |- | ||
|clustal | |clustal | ||
|N | |N | ||
| | |src/binary | ||
|- | |- | ||
|modeller | |modeller | ||
| Line 65: | Line 64: | ||
|openGL | |openGL | ||
|Y | |Y | ||
|free-glut | |is this free-glut ? | ||
|- | |- | ||
|rasmol | |rasmol | ||
| Line 73: | Line 72: | ||
|seqview | |seqview | ||
|N | |N | ||
| | |'''Need url please''' | ||
|- | |- | ||
|treeview | |treeview | ||
| Line 169: | Line 168: | ||
|shockwave | |shockwave | ||
|? | |? | ||
|Is this available | |Is this available for linux? Does flash take care of this? | ||
|- | |- | ||
|acrobat | |acrobat | ||
| Line 193: | Line 192: | ||
|java | |java | ||
|Y | |Y | ||
|Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient | |Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient location SOON. | ||
|- | |- | ||
|'''xine''' | |'''xine''' | ||
|Y | |Y | ||
|} | |} | ||
Revision as of 05:35, 11 August 2007
Software on the workstations
Packages tagged src will be added to a local yum repository on compbio bold = newly added
| Package name | Installation state | Notes |
|---|---|---|
| kile | Y | |
| apbs | N | src |
| molmol | N | Will buy beer if you can get this one working |
| pymol | N | From src |
| pdfedit | Y | |
| emacs | Y | |
| gnuplot | Y | |
| gtk | Y | |
| gtk-devel | Y | |
| xplor-nih | N | binary only |
| clustal | N | src/binary |
| modeller | N | REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm |
| openGL | Y | is this free-glut ? |
| rasmol | N | src and binary |
| seqview | N | Need url please |
| treeview | N | src |
| electric fence library | Y | |
| phylip | N | src and binary |
| blast | N | BLAST and wwwblast + Human EST DB for testing |
| VMD | N | src |
| povray | N | src |
| mead | N | Need url please |
| spdb | N | Don't believe is possible - do it yourself/show me !!! See * |
| rxvt | Y | |
| xterm | Y | |
| GROMACS | N | src |
| GROMOS | N | src |
| gv | Y | |
| xemacs | Y | |
| zsh | Y | |
| vim | Y | |
| lam_mpi | N | src |
| mplayer | Y | No codecs installed |
| vlc | Y | |
| fftw | N | src |
| R | Y | |
| xmms-mp3 | Y | installed AUDACIOUS instead |
| flash | Y | |
| shockwave | ? | Is this available for linux? Does flash take care of this? |
| acrobat | Y | |
| xmgrace | N | src |
| firefox | Y | |
| thunderbird | Y | |
| nedit | Y | |
| java | Y | Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient location SOON. |
| xine | Y |
