ATP binding domain 4 Structures: Difference between revisions

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Ligand Binding Sites and Surface Clefts
Ligand Binding Sites and Surface Clefts
[[Image:PDBsum11.PNG]]


[[Image:PDBsum cleft.PNG]]
[[Image:PDBsum cleft.PNG]]

Revision as of 12:34, 24 May 2009

Daniel's page in progress


Useful info

Here is some useful paper. check it out Link to Paper: http://pfam.sanger.ac.uk/family?acc=PF00764 Dali: http://ekhidna.biocenter.helsinki.fi/dali_server/results/20090512-0051-3897fbdf5431ad2e808e66dde1070610/index.html#alignment-7 Interpro: http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002761

SCOP Work

http://scop.mrc-lmb.cam.ac.uk/scop/data/scop.b.d.cj.c.b.bb.html


Pymol Work

Surface Structure

1ru8.png

Secondary Structure and Location of P-loop (ATP binding site)

PDBsum chain.JPG

1RU8 has 2 domain

1RU8 as 2 domain.png

Electrostatic Surface Potential

1ru8 electro surface.png


alignment of 1RU8 and 2NZ2 (align 1RU8 & i. 11-16, 2NZ2 & i. 11-15)

Dalii.PNG

1RU8 and 2NZ2

1ru8 n 2nz2.png

Ligand Binding Sites and Surface Clefts

PDBsum11.PNG

PDBsum cleft.PNG


Surface Topography

Topo.PNG

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