Software: Difference between revisions

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|From src
|From src
|-
|-
|16 August
|molmol
|Thomas
|N
|Maria
|Will buy beer if you can get this one working
|-
|-
|23 August
|pymol
|Marlies
|N
|'''SPARE''' *
|From src
|-
|-
|30 August
|'''pdfedit'''
|Christophe
|Y
|Aijun
|
|-
|-
|6 September
|emacs
|Itamar
|Y
|Ying
|
|-
|-
|13 September
|gnuplot
|AJ
|Y
|Michael
|
|-
|-
|20 September
|gtk
|David
|Y
|Marlies
|
|-
|-
|27 September
|gtk-devel
|Matt
|Y
|Christophe
|
|-
|-
|4 October
|xplor-nih
|Alpesh
|N
|Alpesh
|Binary only
|-
|-
|11 October
|clustal
|Michael
|N
|Pierre
|From src/binary
|-
|modeller
|N
|REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm
|-
|openGL
|Y
|free-glut ???
|-
|rasmol
|N
|src and binary
|-
|seqview
|N
|COULD SOMEONE PROVIDE ME A URL
|-
|treeview
|N
|src
|-
|electric fence library
|Y
|
|-
|phylip
|N
|src and binary
|-
|blast
|N
|BLAST and wwwblast + Human EST DB for testing
|-
|VMD
|N
|src
|-
|povray
|N
|src
|-
|mead
|N
| '''Need url please'''
|-
|spdb
|N
|Don't believe is possible - do it yourself/show me !!! See '''*'''
|-
|rxvt
|Y
|
|-
|xterm
|Y
|
|-
|GROMACS
|N
|src
|-
|GROMOS
|N
|src
|-
|gv
|Y
|
|-
|xemacs
|Y
|
|-
|zsh
|Y
|
|-
|vim
|Y
|
|-
|lam_mpi
|N
|src
|-
|mplayer
|Y
|No codecs installed
|-
|vlc
|Y
|
|-
|fftw
|N
|src
|-
|R
|Y
|
|-
|xmms-mp3
|Y
|installed AUDACIOUS instead
|-
|flash
|Y
|
|-
|shockwave
|?
|Is this available on linux? I think flash takes care of this.
|-
|acrobat
|Y
|
|-
|xmgrace
|N
|src
|-
|firefox
| Y
|
|-
|thunderbird
|Y
|
|-
|nedit
|Y
|
|-
|java
|Y
|Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient
|-
|'''xine'''
|Y
|}
|}
molmol [ BUY YOU A BEER IF YOU CAN GET THIS ONE WORKING ]
pymol [ FROM SRC]
'''pdfedit'''  ***
emacs ***
gnuplot ***
gtk ***
gtk-devel ***
xplor-nih [BINARY]
clustal [FROM SRC/BINARY]
modeller [REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm }
openGL *** (free-glut ???)
rasmol [SRC and BINARY]
seqview ??? - COULD SOMEONE PROVIDE ME A URL
treeview [SRC]
electric fence library ***
phylip [SRC/BINARY]
blast [BLAST/wwwblast + Human EST DB for testing]
VMD [SRC]
povray [SRC]
mead ??? Need url please
spdb (Don't believe is possible - do it yourself/show me !!!)
rxvt ***
xterm ***
GROMACS {FROM SRC]
GROMOS [FROM SRC]
gv ***
xemacs ***
zsh ***
vim ***
lam_mpi  [FROM SRC]
mplayer *** [NO CODECS INSTALLED]
vlc ***
fftw  [FROM SRC]
R ***
xmms-mp3 (INSTALLED AUDACIOUS INSTEAD) ***
flash ***
shockwave (CAN'T INSTALL ON LINUX)
acrobat ***
xmgrace [FROM SRC]
firefox ***
thunderbird ***
nedit ***
java (/opt/jdk1.6.0_02/) ***
xine = dvd play ***

Revision as of 05:30, 11 August 2007

Software on the workstations

*** =  HAS BEEN INSTALLED
Anything that has to be built from SRC will be added to a local yum repository on compbio
bold = newly added



Name Installed Notes
kile Y
apbs N From src
molmol N Will buy beer if you can get this one working
pymol N From src
pdfedit Y
emacs Y
gnuplot Y
gtk Y
gtk-devel Y
xplor-nih N Binary only
clustal N From src/binary
modeller N REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm
openGL Y free-glut ???
rasmol N src and binary
seqview N COULD SOMEONE PROVIDE ME A URL
treeview N src
electric fence library Y
phylip N src and binary
blast N BLAST and wwwblast + Human EST DB for testing
VMD N src
povray N src
mead N Need url please
spdb N Don't believe is possible - do it yourself/show me !!! See *
rxvt Y
xterm Y
GROMACS N src
GROMOS N src
gv Y
xemacs Y
zsh Y
vim Y
lam_mpi N src
mplayer Y No codecs installed
vlc Y
fftw N src
R Y
xmms-mp3 Y installed AUDACIOUS instead
flash Y
shockwave ? Is this available on linux? I think flash takes care of this.
acrobat Y
xmgrace N src
firefox Y
thunderbird Y
nedit Y
java Y Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient
xine Y
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