Software

Software on the workstations

*** = HAS BEEN INSTALLED Anything that has to be built from SRC will be added to a local yum repository on compbio bold = newly added

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kile ***

apbs [FROM SRC]

molmol [ BUY YOU A BEER IF YOU CAN GET THIS ONE WORKING ]

pymol [ FROM SRC]

pdfedit ***

emacs ***

gnuplot ***

gtk ***

gtk-devel ***

xplor-nih [BINARY]

clustal [FROM SRC/BINARY]

modeller [REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm }

openGL *** (free-glut ???)

rasmol [SRC and BINARY]

seqview ??? - COULD SOMEONE PROVIDE ME A URL

treeview [SRC]

electric fence library ***

phylip [SRC/BINARY]

blast [BLAST/wwwblast + Human EST DB for testing]

VMD [SRC]

povray [SRC]

mead ??? Need url please

spdb (Don't believe is possible - do it yourself/show me !!!)

rxvt ***

xterm ***

GROMACS {FROM SRC]

GROMOS [FROM SRC]

gv ***

xemacs ***

zsh ***

vim ***

lam_mpi [FROM SRC]

mplayer *** [NO CODECS INSTALLED]

vlc ***

fftw [FROM SRC]

R ***

xmms-mp3 (INSTALLED AUDACIOUS INSTEAD) ***

flash ***

shockwave (CAN'T INSTALL ON LINUX)

acrobat ***

xmgrace [FROM SRC]

firefox ***

thunderbird ***

nedit ***

java (/opt/jdk1.6.0_02/) ***

xine = dvd play ***