Software
Software that is installed or is to be installed on the workstations
Packages tagged src will be added to a local yum repository on compbio bold = newly added Related: SEE - yum_repo and building_rpms
Package name | Installation state | Notes |
---|---|---|
checkinstall | See checkinstall_patch. SEE: /usr/src/redhat/RPMS/x86_64/checkinstall-1.6.1-1.x86_64.rpm | |
kile | ||
apbs | src and binary. | |
molmol | Will buy beer if you can get this one working | |
pymol | src - no up-to-date binaries are provided now without a license
python setup.py build python setup.py install python setup2.py install python setup2.py uninstall cp ./pymol /usr/local/bin | |
pdfedit | ||
emacs | ||
gnuplot | ||
gtk | ||
gtk-devel | ||
xplor-nih | binary only
Could not run the test-scripts ! Check !!! | |
clustal | src and binary | |
modeller | REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm | |
openGL | is this free-glut ? | |
rasmol | src and binary | |
seqview | Need url please | |
treeview | src | |
electric fence library | ||
phylip | src and binary | |
blast | BLAST and wwwblast + Human EST DB for testing | |
VMD | src. In /opt | |
povray | src. /usr/src/redhat/RPMS/x86_64/povray-3.6.1-3.fc7.x86_64.rpm | |
mead | Need url please | |
spdb | Don't believe is possible - do it yourself/show me !!! See *
OK - I have found a src rpm. These are the steps I carried out as I could not rebuild directly rpm -iUvh spdbv-3.7.5-3.src.rpm vi /usr/src/redhat/SPECS/spdbv.spec replace Copyright with License rpmbuild -ba /usr/src/redhat/SPECS/spdbv.spec WE NOW HAVE: /usr/src/redhat/RPMS/x86_64/spdbv-3.7.5-3.x86_64.rpm | |
rxvt | ||
xterm | ||
GROMACS | src | |
GROMOS | src | |
gv | ||
xemacs | ||
zsh | ||
vim | ||
lam_mpi | src | |
mplayer | No codecs installed | |
vlc | ||
fftw | src | |
R | ||
xmms-mp3 | installed AUDACIOUS instead | |
flash | ||
shockwave | ? | Is this available for linux? Does flash take care of this? |
acrobat | ||
xmgrace |
Requires: Motif/LessTif yum install lesstif (note: only i386 available) yum install grace (note: installs fftw2 | |
firefox | ||
thunderbird | ||
nedit | ||
java | Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient location SOON. | |
xine |
Bioinformatics/Computational Biology/X-ray Crystallography rpm repositories
- http://serine.umdnj.edu/~golharam/biorpms/downloads.php
- http://biopackages.net/
- http://www.biolinux.org/wiki/index.php/Main_Page
- http://uberh4x0r.org/~yax/biorpm/
- http://apt.bea.ki.se/
- http://apt.bioxray.dk/rhel/el4/x86_64/html/index_xray.html
Fedora Software Groups
- To create rpm's for the correct group
Amusements/Games
Amusements/Graphics
Applications/Archiving
Applications/Communications
Applications/Databases
Applications/Editors
Applications/Emulators
Applications/Engineering
Applications/File
Applications/Internet
Applications/Multimedia
Applications/Productivity
Applications/Publishing
Applications/System
Applications/Text
Development/Debuggers
Development/Languages
Development/Libraries
Development/System
Development/Tools
Documentation
System Environment/Base
System Environment/Daemons
System Environment/Kernel
System Environment/Libraries
System Environment/Shells
User Interface/Desktops
User Interface/X
User Interface/X Hardware Support