References - 2qgnA

• Beiko, R. G., T. J. Harlow, et al. (2005). "Highways of gene sharing in prokaryotes." Proc Natl Acad Sci U S A 102(40): 14332-7.

• Kohli, D. K. and A. K. Bachhawat (2003). "CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics." Nucleic Acids Res 31(13): 3501-2.

• NCBI. (2008). "National Center for Biotechnology Information." from http://www.ncbi.nlm.nih.gov/.

• Rambaut, A. (2006). "Institute of Evolutionary Biology, University of Edinburgh: FigTree Version 1.0." from http://tree.bio.ed.ac.uk/software/figtree/

• Holm L and Sander C. Dali/FSSP classification of three-dimensional protein folds Nucleic Acids Research. 25, 231-234 (1997)

• Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB and Thornton JM. CATH - a hierarchic classification of protein domain structures. Structure. 5, 1093-1109 (1997)

• Laskowski RA, Watson JD and Thornton JM. ProFunc: a server for predicting protein function from 3D structure.Nucleic Acids Research. 33, W89-W93 (2005)

• DeLano, W.L. The PyMOL Molecular Graphics System (2002) DeLano Scientific, San Carlos, CA, USA.

• Function of protein. http://www.pantherdb.org/list/list.do?save=yes&searchModType=unfilterSpecies&filterLevel=1&listType=1&cutoff=1.0

• Information about the gene encoding the protein, tRNA isopentenyltransferase 1 http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005800

• Sequence motifs of protein found using MotifFinder and Prosite. Retrieved from http://motif.genome.jp/motif-bin/Srch_Motif_Lib and http://ca.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=79404153580.scan.gz

• Function of tRNA-IPT. Retrieved from http://www.genesdev.org/cgi/reprint/17/2/162.pdf

Literature references

• Laskowski,R.A. , Luscombe,N.M. , Swindells,M.B. AND Thornton,M.J.(1994) Protein clefts in molecular recognition and function Protein Science, 5:2438-2452.

• Martin N.A. and Hopper A.K. (1994). How single genes provide tRNA processing enzymes to mitochondria,nuclei and the cytosol. Biochimie 76 : 1161-1167

• Golovko.A. , Hjalm.G , Sitbon.F. and Nicander.B.,.(2000). Cloning of a human tRNA isopentenyl transferase. Gene 258 (2000) 85–93.

• The P-loop — a common motif in ATP- and GTP-binding proteins. Retrieved from http://www.sciencedirect.com.ezproxy.library.uq.edu.au/science?_ob=MImg&_imagekey=B6TCV-4864C9B-3K1&_cdi=5180&_user=331728&_orig=browse&_coverDate=11%2F30%2F1990&_sk=999849988&view=c&wchp=dGLbVtz-zSkzV&md5=aa860b3e9ffdbc0359bbf2d3be369038&ie=/sdarticle.pdf

• Liang et al., (1998). Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design. Protein Science : 71884-1897.