Software
Software that is installed or is to be installed on the workstations
Packages tagged src will be added to a local yum repository on compbio bold = newly added Related: SEE - yum_repo and building_rpms
Package name | Installation state | Notes |
---|---|---|
checkinstall | Y | See checkinstall_patch. SEE: /usr/src/redhat/RPMS/x86_64/checkinstall-1.6.1-1.x86_64.rpm |
kile | Y | |
apbs | N | src and binary. |
molmol | N | Will buy beer if you can get this one working |
pymol | Y | src - no up-to-date binaries are provided now without a license
python setup.py build python setup.py install python setup2.py install python setup2.py uninstall cp ./pymol /usr/local/bin |
pdfedit | Y | |
emacs | Y | |
gnuplot | Y | |
gtk | Y | |
gtk-devel | Y | |
xplor-nih | Y | binary only
Could not run the test-scripts ! Check !!! |
clustal | N | src and binary |
modeller | N | REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm |
openGL | Y | is this free-glut ? |
rasmol | N | src and binary |
seqview | N | Need url please |
treeview | N | src |
electric fence library | Y | |
phylip | N | src and binary |
blast | N | BLAST and wwwblast + Human EST DB for testing |
VMD | N | src |
povray | N | src. /usr/src/redhat/RPMS/x86_64/povray-3.6.1-3.fc7.x86_64.rpm |
mead | N | Need url please |
spdb | N | Don't believe is possible - do it yourself/show me !!! See *
OK - I have found a src rpm. These are the steps I carried out as I could not rebuild directly rpm -iUvh spdbv-3.7.5-3.src.rpm vi /usr/src/redhat/SPECS/spdbv.spec replace Copyright with License rpmbuild -ba /usr/src/redhat/SPECS/spdbv.spec WE NOW HAVE: /usr/src/redhat/RPMS/x86_64/spdbv-3.7.5-3.x86_64.rpm |
rxvt | Y | |
xterm | Y | |
GROMACS | N | src MD GROUP CAN DO THIS ONE |
GROMOS | N | src MD GROUP CAN DO THIS ONE |
gv | Y | |
xemacs | Y | |
zsh | Y | |
vim | Y | |
lam_mpi | N | src MD GROUP CAN DO THIS ONE |
mplayer | Y | No codecs installed |
vlc | Y | |
fftw | N | src MD GROUP CAN DO THIS ONE |
R | Y | |
xmms-mp3 | Y | installed AUDACIOUS instead |
flash | Y | |
shockwave | ? | Is this available for linux? Does flash take care of this? |
acrobat | Y | |
xmgrace | Y |
Requires: Motif/LessTif yum install lesstif (note: only i386 available) yum install grace (note: installs fftw2 |
firefox | Y | |
thunderbird | Y | |
nedit | Y | |
java | Y | Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient location SOON. |
xine | Y |
Bioinformatics/Computational Biology/X-ray Crystallography rpm repositories
- http://serine.umdnj.edu/~golharam/biorpms/downloads.php
- http://biopackages.net/
- http://www.biolinux.org/wiki/index.php/Main_Page
- http://uberh4x0r.org/~yax/biorpm/
- http://apt.bea.ki.se/
- http://apt.bioxray.dk/rhel/el4/x86_64/html/index_xray.html
Fedora Software Groups
- To create rpm's for the correct group
Amusements/Games
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