Clustal Alignment: Difference between revisions

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CLUSTAL W (1.83) multiple sequence alignment
CLUSTAL W (1.83) multiple sequence alignment


gi|118479060|ref|YP_896211.1| (Bacillus thuringiensis)


gi|118479060|ref|YP_896211.1|      MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVD
gi|30021926|ref|NP_833557.1|  (Bacillus cereus)
gi|30021926|ref|NP_833557.1|       ------------------MVIQWFPGHMAKARRQVTEKLKLIDVVIELVD
gi|16078668|ref|NP_389487.1|      ------------------MTIQWFPGHMAKARREVTEKLKLIDIVYELVD
1T9H_A|PDBID|CHAIN|SEQUENCE        ------------------MARHHHHHHMPEGK-IIKALSGFYYVLDESED
                                                    *. : .  **.:.:  :.    :  :: * *


gi|118479060|ref|YP_896211.1|      AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
gi|16078668|ref|NP_389487.1|  (Bacillus subtilis
gi|30021926|ref|NP_833557.1|      AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
gi|16078668|ref|NP_389487.1|       AR--IPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI
1T9H_A|PDBID|CHAIN|SEQUENCE        SDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIR
                                  :  :  .*. : .: :.      :: :*: .    :    :: 


gi|118479060|ref|YP_896211.1|      MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN
1T9H_A|PDBID|CHAIN|SEQUENCE  (Bacillus subtilis a circularly permuted GTPase.)(not ours)
gi|30021926|ref|NP_833557.1|      MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN
gi|16078668|ref|NP_389487.1|      RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPN
1T9H_A|PDBID|CHAIN|SEQUENCE       PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE
                                    .:.        :. : .: .  : ::*  :   .     *    :.: :


gi|118479060|ref|YP_896211.1|      VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP--
gi|30021926|ref|NP_833557.1|      VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP--
gi|16078668|ref|NP_389487.1|      VGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP--
1T9H_A|PDBID|CHAIN|SEQUENCE        DQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQ
                                    .:    :  ::  : *    :*::::  .:.. :  ::    ::. 


gi|118479060|ref|YP_896211.1|      --KFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER
MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVD
gi|30021926|ref|NP_833557.1|      --KFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER
<nowiki>------------------</nowiki>MVIQWFPGHMAKARRQVTEKLKLIDVVIELVD
gi|16078668|ref|NP_389487.1|      --KFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPER--LKER
<nowiki>------------------</nowiki>MTIQWFPGHMAKARREVTEKLKLIDIVYELVD
1T9H_A|PDBID|CHAIN|SEQUENCE        SGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADT
<nowiki>------------------</nowiki>MARHHHHHHMPEGK-IIKALSGFYYVLDESED
                                      :..*:.  * .:.* :  . . . *.:*  :..  : :
                  *. : .  **.:.:  :.   : :: *  *


gi|118479060|ref|YP_896211.1|      YNLNDIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR
AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
gi|30021926|ref|NP_833557.1|      YNLNEIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR
AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
gi|16078668|ref|NP_389487.1|      YGLDEIP------EDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIR
AR--IPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI
1T9H_A|PDBID|CHAIN|SEQUENCE        PGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVE
SDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIR
                                    .:..:       *::   *  * :: ..    * :. .:..  : : :.
:  :  .*. : .: :.      :: :*: .     :     ::  


gi|118479060|ref|YP_896211.1|      GGKLGKMTFETPEEFAEQTEDAEKVEEV
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN
gi|30021926|ref|NP_833557.1|       GGKLGKMTFETPEEFGEQVEDVEKIEEV
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN
gi|16078668|ref|NP_389487.1|      TEKFGRLSFEQPTM--------------
RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPN
1T9H_A|PDBID|CHAIN|SEQUENCE        DGELKQYRYDHYVEFMTEIKDRKPRY--
PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE
                                    :: :  ::
.:.        :. : .: .  : ::*  :  .    *    :.: :
 
VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP--
VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP--
VGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP--
DQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQ
  .:    :  ::  : *    :*::::  .:.. :  ::    ::. 
 
--KFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER
--KFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER
--KFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPER--LKER
SGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADT
    :..*:.  .  *  .:.* :  . . .  *.:*  :..  : :
 
YNLNDIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR
YNLNEIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR
YGLDEIP------EDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIR
PGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVE
.:..:       *::  *  * :: ..    * :. .:..  : : :.
 
GGKLGKMTFETPEEFAEQTEDAEKVEEV
GGKLGKMTFETPEEFGEQVEDVEKIEEV
TEKFGRLSFEQPTM--------------
DGELKQYRYDHYVEFMTEIKDRKPRY--
  :: :  ::

Latest revision as of 06:35, 8 May 2007

CLUSTAL W (1.83) multiple sequence alignment

gi|118479060|ref|YP_896211.1| (Bacillus thuringiensis)

gi|30021926|ref|NP_833557.1| (Bacillus cereus)

gi|16078668|ref|NP_389487.1| (Bacillus subtilis

1T9H_A|PDBID|CHAIN|SEQUENCE (Bacillus subtilis a circularly permuted GTPase.)(not ours)


MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVD ------------------MVIQWFPGHMAKARRQVTEKLKLIDVVIELVD ------------------MTIQWFPGHMAKARREVTEKLKLIDIVYELVD ------------------MARHHHHHHMPEGK-IIKALSGFYYVLDESED

                 *. : .  **.:.:  :.    :  :: *  *

AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH AR--IPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI SDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIR

: .*. : .: :.  :: :*: .  :  ::

MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPN PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE

.:.        :. : .: .  : ::*  :   .     *    :.: :

VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP-- VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP-- VGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP-- DQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQ

 .:    :   ::  : *    :*::::  .:.. :  ::    ::.  

--KFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER --KFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER --KFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPER--LKER SGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADT

   :..*:.   .  *  .:.* :  . . .  *.:*  :..   : : 

YNLNDIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR YNLNEIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR YGLDEIP------EDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIR PGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVE

.:..:       *::   *  * :: ..    * :. .:..  : : :.

GGKLGKMTFETPEEFAEQTEDAEKVEEV GGKLGKMTFETPEEFGEQVEDVEKIEEV TEKFGRLSFEQPTM-------------- DGELKQYRYDHYVEFMTEIKDRKPRY--

 :: :  ::