Protein Assignment: Difference between revisions

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<TABLE border="1" summary="target table">
Below there are pages provided which contain tables for our target proteins that summerise important information and links to databases.


<TR bgcolor="yellow"><TH>#
=== Protein structure and sequences ===
<TH>PDB
[[Target PDB Table]] contains links to stucture and sequence data.
<TH>release
<TH>sequence
<TH>human
<TH>human-len
<TH>%seqID
<TH>ali-len
<TH>HomoloGene
<TH>PubMed
<TH>name


<TR><TH>1
=== Human orthologs of target proteins ===
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1Z2Z 1z2zA]
[[Target Human Ortholog Table]] contains the human orthologs and links to sequence and functional data.
<TD>2005-04-26
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=66361302 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=50727002 human protein]
<TD>661
<TD>24.11
<TD>419
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=50727002 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=50727002 PubMed]<br>
<TD>pseudouridylate synthase 7 homolog <br>


<TR><TH>2
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I5T 2i5tA]
<TD>2006-09-12
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=116668009 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=13129018 human protein]
<TD>188
<TD>97.86
<TD>187
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=13129018 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=13129018 PubMed]<br>
<TD>hypothetical protein LOC79017 <br>


<TR><TH>3
=== Mouse orthologs of target proteins ===
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2HQX 2hqxA]
[[Target Mouse Ortholog Table]] contains the mouse orthologs and links to sequence and functional data.
<TD>2006-10-10
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=118137962 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=77404397 human protein]
<TD>910
<TD>99.19
<TD>246
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=77404397 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=77404397 PubMed]<br>
<TD>staphylococcal nuclease domain containing 1 <br>
 
<TR><TH>4
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1DFC 1dfcA]
<TD>2000-11-22
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=11513470 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4507115 human protein]
<TD>493
<TD>100.00
<TD>493
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4507115 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4507115 PubMed]<br>
<TD>fascin 1 <br>
 
<TR><TH>5
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1PUJ 1pujA]
<TD>2003-07-08
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33358156 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=93277113 human protein]
<TD>334
<TD>34.13
<TD>252
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=93277113 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=93277113 PubMed]<br>
<TD>GTP_binding protein <br>
 
<TR><TH>6
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1T9F 1t9fA]
<TD>2004-05-25
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=49259280 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=14141195 human protein]
<TD>211
<TD>54.29
<TD>175
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=14141195 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=14141195 PubMed]<br>
<TD>stromal cell-derived factor 2 precursor <br>
 
<TR><TH>7
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2F6R 2f6rA]
<TD>2005-12-27
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544617 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=46048207 human protein]
<TD>564
<TD>86.47
<TD>266
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene&cmd=&term=NP_079509&go=Go HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=46048207 PubMed]<br>
<TD>Bifunctional coenzyme A synthase (CoA synthase)<br>
 
<TR><TH>8
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2DUL 2dulA]
<TD>2007-01-24
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=126030311 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=8923219 human protein]
<TD>659
<TD>29.91
<TD>351
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=8923219 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=8923219 PubMed]<br>
<TD>TRM1 tRNA methyltransferase 1 <br>
 
<TR><TH>9
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2IFU 2ifuA]
<TD>2006-10-10
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=118138356 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4505331 human protein]
<TD>312
<TD>72.12
<TD>312
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4505331 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4505331 PubMed]<br>
<TD>N-ethylmaleimide-sensitive factor attachment protein, gamma <br>
 
<TR><TH>10
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1JZT 1jztA]
<TD>2001-09-26
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=15988207 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=91984773 human protein]
<TD>288
<TD>40.00
<TD>245
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=91984773 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=91984773 PubMed]<br>
<TD>apolipoprotein A-I binding protein precursor <br>
 
<TR><TH>11
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2F7F 2f7fA]
<TD>2005-12-13
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544633 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=40255089 human protein]
<TD>466
<TD>32.43
<TD>441
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=40255089 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=40255089 PubMed]<br>
<TD>nicotinate phosphoribosyltransferase domain containing 1 <br>
 
<TR><TH>12
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2HO4 2ho4A]
<TD>2006-08-15
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=114794442 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=14149777 human protein]
<TD>259
<TD>87.21
<TD>258
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=14149777 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=14149777 PubMed]<br>
<TD>haloacid dehalogenase-like hydrolase domain containing 2 <br>
 
<TR><TH>13
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1ZKD 1zkdA]
<TD>2005-05-10
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=67464609 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=21396487 human protein]
<TD>441
<TD>38.48
<TD>343
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=21396487 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=21396487 PubMed]<br>
<TD>hypothetical protein LOC55471 isoform 1 <br>
 
<TR><TH>14
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1PV1 1pv1A]
<TD>2004-11-30
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=56965881 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33413400 human protein]
<TD>282
<TD>40.14
<TD>289
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=33413400 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=33413400 PubMed]<br>
<TD>esterase D/formylglutathione hydrolase <br>
 
<TR><TH>15
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1WIX 1wixA]
<TD>2004-11-28
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=56966906 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=7705415 human protein]
<TD>728
<TD>88.89
<TD>153
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=7705415 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=7705415 PubMed]<br>
<TD>hook homolog 1 <br>
 
<TR><TH>16
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2OCE 2oceA]
<TD>2007-01-02
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=122921517 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=39841073 human protein]
<TD>995
<TD>33.42
<TD>781
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=39841073 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=39841073 PubMed]<br>
<TD>S1 RNA binding domain 1 <br>
 
<TR><TH>17
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I9U 2i9uA]
<TD>2006-09-19
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=116668068 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4758426 human protein]
<TD>454
<TD>37.61
<TD>444
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4758426 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4758426 PubMed]<br>
<TD>guanine deaminase <br>
 
<TR><TH>18
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2GFH 2gfhA]
<TD>2006-04-18
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=99032497 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=23308749 human protein]
<TD>248
<TD>94.33
<TD>247
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=23308749 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=23308749 PubMed]<br>
<TD>haloacid dehalogenase-like hydrolase domain containing 4 <br>
 
<TR><TH>19
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2FRN 2frnA]
<TD>2006-03-07
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=93279718 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=8923676 human protein]
<TD>448
<TD>36.04
<TD>222
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=8923676 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=8923676 PubMed]<br>
<TD>homolog of yeast tRNA methyltransferase <br>
 
<TR><TH>20
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2GNX 2gnxA]
<TD>2006-05-02
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=99032654 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=47458825 human protein]
<TD>445
<TD>91.30
<TD>322
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=47458825 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=47458825 PubMed]<br>
<TD>hypothetical protein LOC144577 <br>
 
<TR><TH>21
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I2O 2i2oA]
<TD>2006-08-29
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=114794699 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=23510352 human protein]
<TD>256
<TD>63.10
<TD>252
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=23510352 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=23510352 PubMed]<br>
<TD>MIF4G domain containing <br>
 
<TR><TH>22
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2CW9 2cw9A]
<TD>2005-12-17
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544427 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33636719 human protein]
<TD>452
<TD>96.26
<TD>187
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=33636719 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=33636719 PubMed]<br>
<TD>translocase of inner mitochondrial membrane 44 <br>
 
</TABLE>

Revision as of 02:46, 24 April 2007

Below there are pages provided which contain tables for our target proteins that summerise important information and links to databases.

Protein structure and sequences

Target PDB Table contains links to stucture and sequence data.

Human orthologs of target proteins

Target Human Ortholog Table contains the human orthologs and links to sequence and functional data.


Mouse orthologs of target proteins

Target Mouse Ortholog Table contains the mouse orthologs and links to sequence and functional data.

Retrieved from "http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Protein_Assignment&oldid=1543"