Protein Assignment: Difference between revisions

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<TABLE border="1" summary="target table">
__NOTOC__


<TR bgcolor="yellow"><TH>#
Below there are pages provided which contain tables for our target proteins that summerise important information and links to databases.
<TH>PDB
When you have formed groups and chosen your target protein, claim the target by adding your names into the protein assignment table below.
<TH>release
<TH>sequence
<TH>human
<TH>human-len
<TH>%seqID
<TH>ali-len
<TH>HomoloGene
<TH>PubMed
<TH>name


<TR><TH>1
=== Protein structure and sequences ===
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1Z2Z 1z2zA]
[[Target PDB Table]] contains links to stucture and sequence data.
<TD>2005-04-26
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=66361302 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=50727002 human protein]
<TD>661
<TD>24.11
<TD>419
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=50727002 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=50727002 PubMed]<br>
<TD>pseudouridylate synthase 7 homolog <br>


<TR><TH>2
=== Human orthologs of target proteins ===
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I5T 2i5tA]
[http://compbio.chemistry.uq.edu.au/bmmg/StrGx/BIOL3004/targets_human.html Target Human Ortholog Table] contains the human orthologs and links to sequence and functional data.
<TD>2006-09-12
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=116668009 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=13129018 human protein]
<TD>188
<TD>97.86
<TD>187
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=13129018 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=13129018 PubMed]<br>
<TD>hypothetical protein LOC79017 <br>


<TR><TH>3
=== Mouse orthologs of target proteins ===
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2HQX 2hqxA]
[http://compbio.chemistry.uq.edu.au/bmmg/StrGx/BIOL3004/targets_mouse.html Target Mouse Ortholog Table] contains the mouse orthologs and links to sequence and functional data.
<TD>2006-10-10
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=118137962 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=77404397 human protein]
<TD>910
<TD>99.19
<TD>246
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=77404397 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=77404397 PubMed]<br>
<TD>staphylococcal nuclease domain containing 1 <br>


<TR><TH>4
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1DFC 1dfcA]
<TD>2000-11-22
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=11513470 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4507115 human protein]
<TD>493
<TD>100.00
<TD>493
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4507115 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4507115 PubMed]<br>
<TD>fascin 1 <br>


<TR><TH>5
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1PUJ 1pujA]
<TD>2003-07-08
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33358156 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=93277113 human protein]
<TD>334
<TD>34.13
<TD>252
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=93277113 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=93277113 PubMed]<br>
<TD>GTP_binding protein <br>


<TR><TH>6
'''Please choose from the following targets:'''
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1T9F 1t9fA]
<TD>2004-05-25
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=49259280 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=14141195 human protein]
<TD>211
<TD>54.29
<TD>175
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=14141195 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=14141195 PubMed]<br>
<TD>stromal cell-derived factor 2 precursor <br>


<TR><TH>7
high priority: 2, 13, 18, 20,
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2F6R 2f6rA]
5, 7, 9, 14,<br>
<TD>2005-12-27
1, 11, 12, 21<br>
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544617 protein]
do '''not''' initially choose: 3, 4, 6, 8, 10, 15, 16, 17, 19, 22
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=46048207 human protein]
<TD>564
<TD>86.47
<TD>266
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene&cmd=&term=NP_079509&go=Go HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=46048207 PubMed]<br>
<TD>Bifunctional coenzyme A synthase (CoA synthase)<br>


<TR><TH>8
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2DUL 2dulA]
<TD>2007-01-24
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=126030311 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=8923219 human protein]
<TD>659
<TD>29.91
<TD>351
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=8923219 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=8923219 PubMed]<br>
<TD>TRM1 tRNA methyltransferase 1 <br>


<TR><TH>9
=== Protein Assignment Table ===
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2IFU 2ifuA]
{| border="1" cellspacing="0" cellpadding="5"
<TD>2006-10-10
! target number
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=118138356 protein]
! PDB code
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4505331 human protein]
! protein name
<TD>312
! investigators
<TD>72.12
|-
<TD>312
| 22
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4505331 HomoloGene]
| 2cw9
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4505331 PubMed]<br>
| translocase of inner mitochondrial membrane 44
<TD>N-ethylmaleimide-sensitive factor attachment protein, gamma <br>
| Josefine Sprenger, Mittchell Stanton-Cook, Thomas Huber
|-
| 9
| 2ifuA
| N-ethylmaleimide-sensitive factor attachment protein, gamma  
| Festia Stefanus, Vanessa Baramuli, Justine Kuswara
|-
| 5
| 1pujA
| GTP_binding protein
| Alexander Mulherin, Takayuki Hasegawa, Scott Allen
|-
| 18
| 2gfhA
| N-acetylneuraminic acid phosphatase
| Jason Cheong, YauHeenWai, Lim Junxian
|-
| 12
| 2ho4A
| haloacid dehalogenase-like hydrolase domain containing 2
| John Tsai, Wilson Chang, Kaneez Jafferi
|-
| 21
| 2i20A
| MIF4G Domain Containing
| Jen McAuliffe, Penny Mills, Eliza Ho
|-
| 20
| 2gnxA
| Hypothetical Protein LOC144577
| Mel, Saurav, Mari, Sam
|-
| 7
| 2f6rA
| Bifunctional coenzyme A synthase (CoA synthase)
| Rachael Slade, Hayley Thomas, Ben Leahy
|-
| 13
| 1zkdA
| Hypothetical protein LOC55471 isoform 1
| Timm, Haresh, Vern
|}


<TR><TH>10
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1JZT 1jztA]
<TD>2001-09-26
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=15988207 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=91984773 human protein]
<TD>288
<TD>40.00
<TD>245
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=91984773 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=91984773 PubMed]<br>
<TD>apolipoprotein A-I binding protein precursor <br>


<TR><TH>11
=== Winter vacation scholarship ===
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2F7F 2f7fA]
Please indicate if you're interested to be considered for the winter vacation scholarship to complete your work for publication. This will have no influence on the project mark!
<TD>2005-12-13
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544633 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=40255089 human protein]
<TD>466
<TD>32.43
<TD>441
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=40255089 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=40255089 PubMed]<br>
<TD>nicotinate phosphoribosyltransferase domain containing 1 <br>


<TR><TH>12
{| border="1" cellspacing="0" cellpadding="5"
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2HO4 2ho4A]
! name
<TD>2006-08-15
! protein name
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=114794442 protein]
! keen and available for scholarship
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=14149777 human protein]
|-
<TD>259
|Festia Stefanus
<TD>87.21
|N-ethylmaleimide-sensitive factor attachment protein, gamma
<TD>258
|
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=14149777 HomoloGene]
|-
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=14149777 PubMed]<br>
|Vanessa Baramuli
<TD>haloacid dehalogenase-like hydrolase domain containing 2 <br>
|N-ethylmaleimide-sensitive factor attachment protein, gamma
|
|-
|Justine Kuswara
|N-ethylmaleimide-sensitive factor attachment protein, gamma
|
|-
|Alexander Mulherin
|GTP_binding protein
|
|-
|Takayuki Hasegawa
|GTP_binding protein
|
|-
|Scott Allen
|GTP_binding protein
|
|-
|Jason Cheong
|N-acetylneuraminic acid phosphatase
|
|-
|YauHeenWai
|N-acetylneuraminic acid phosphatase
|
|-
|Lim Junxian
|N-acetylneuraminic acid phosphatase
|
|-
|John Tsai
|haloacid dehalogenase-like hydrolase domain containing 2
|
|-
|Wilson Chang
|haloacid dehalogenase-like hydrolase domain containing 2
|
|-
|Kaneez Jafferi
|haloacid dehalogenase-like hydrolase domain containing 2
|yes please
|-
|Jen McAuliffe
|MIF4G Domain Containing
|
|-
|Penny Mills
|MIF4G Domain Containing
|
|-
|Eliza Ho
|MIF4G Domain Containing
|
|-
|Mel
|Hypothetical Protein LOC144577
|
|-
|Saurav
|Hypothetical Protein LOC144577
|
|-
|Mari
|Hypothetical Protein LOC144577
|
|-
|Sam
|Hypothetical Protein LOC144577
|
|-
|Rachael Slade
|Bifunctional coenzyme A synthase (CoA synthase)
|Yes Please
|-
|Hayley Thomas
|Bifunctional coenzyme A synthase (CoA synthase)
|
|-
|Ben Leahy
|Bifunctional coenzyme A synthase (CoA synthase)
|Yes Please
|-
|Timm
|Hypothetical protein LOC55471 isoform 1
|
|-
|Haresh
|Hypothetical protein LOC55471 isoform 1
|
|-
|Vern
|Hypothetical protein LOC55471 isoform 1
|
|-
|}


<TR><TH>13
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1ZKD 1zkdA]
<TD>2005-05-10
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=67464609 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=21396487 human protein]
<TD>441
<TD>38.48
<TD>343
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=21396487 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=21396487 PubMed]<br>
<TD>hypothetical protein LOC55471 isoform 1 <br>


<TR><TH>14
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1PV1 1pv1A]
<TD>2004-11-30
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=56965881 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33413400 human protein]
<TD>282
<TD>40.14
<TD>289
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=33413400 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=33413400 PubMed]<br>
<TD>esterase D/formylglutathione hydrolase <br>


<TR><TH>15
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1WIX 1wixA]
<TD>2004-11-28
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=56966906 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=7705415 human protein]
<TD>728
<TD>88.89
<TD>153
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=7705415 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=7705415 PubMed]<br>
<TD>hook homolog 1 <br>


<TR><TH>16
--[[User:ThomasHuber|ThomasHuber]] 13:45, 24 April 2007 (EST)
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2OCE 2oceA]
<TD>2007-01-02
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=122921517 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=39841073 human protein]
<TD>995
<TD>33.42
<TD>781
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=39841073 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=39841073 PubMed]<br>
<TD>S1 RNA binding domain 1 <br>
 
<TR><TH>17
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I9U 2i9uA]
<TD>2006-09-19
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=116668068 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4758426 human protein]
<TD>454
<TD>37.61
<TD>444
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4758426 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4758426 PubMed]<br>
<TD>guanine deaminase <br>
 
<TR><TH>18
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2GFH 2gfhA]
<TD>2006-04-18
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=99032497 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=23308749 human protein]
<TD>248
<TD>94.33
<TD>247
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=23308749 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=23308749 PubMed]<br>
<TD>haloacid dehalogenase-like hydrolase domain containing 4 <br>
 
<TR><TH>19
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2FRN 2frnA]
<TD>2006-03-07
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=93279718 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=8923676 human protein]
<TD>448
<TD>36.04
<TD>222
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=8923676 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=8923676 PubMed]<br>
<TD>homolog of yeast tRNA methyltransferase <br>
 
<TR><TH>20
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2GNX 2gnxA]
<TD>2006-05-02
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=99032654 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=47458825 human protein]
<TD>445
<TD>91.30
<TD>322
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=47458825 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=47458825 PubMed]<br>
<TD>hypothetical protein LOC144577 <br>
 
<TR><TH>21
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I2O 2i2oA]
<TD>2006-08-29
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=114794699 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=23510352 human protein]
<TD>256
<TD>63.10
<TD>252
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=23510352 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=23510352 PubMed]<br>
<TD>MIF4G domain containing <br>
 
<TR><TH>22
<TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2CW9 2cw9A]
<TD>2005-12-17
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544427 protein]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33636719 human protein]
<TD>452
<TD>96.26
<TD>187
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=33636719 HomoloGene]
<TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=33636719 PubMed]<br>
<TD>translocase of inner mitochondrial membrane 44 <br>
 
</TABLE>

Latest revision as of 03:10, 12 June 2007


Below there are pages provided which contain tables for our target proteins that summerise important information and links to databases. When you have formed groups and chosen your target protein, claim the target by adding your names into the protein assignment table below.

Protein structure and sequences

Target PDB Table contains links to stucture and sequence data.

Human orthologs of target proteins

Target Human Ortholog Table contains the human orthologs and links to sequence and functional data.

Mouse orthologs of target proteins

Target Mouse Ortholog Table contains the mouse orthologs and links to sequence and functional data.


Please choose from the following targets:

high priority: 2, 13, 18, 20, 5, 7, 9, 14,
1, 11, 12, 21
do not initially choose: 3, 4, 6, 8, 10, 15, 16, 17, 19, 22


Protein Assignment Table

target number PDB code protein name investigators
22 2cw9 translocase of inner mitochondrial membrane 44 Josefine Sprenger, Mittchell Stanton-Cook, Thomas Huber
9 2ifuA N-ethylmaleimide-sensitive factor attachment protein, gamma Festia Stefanus, Vanessa Baramuli, Justine Kuswara
5 1pujA GTP_binding protein Alexander Mulherin, Takayuki Hasegawa, Scott Allen
18 2gfhA N-acetylneuraminic acid phosphatase Jason Cheong, YauHeenWai, Lim Junxian
12 2ho4A haloacid dehalogenase-like hydrolase domain containing 2 John Tsai, Wilson Chang, Kaneez Jafferi
21 2i20A MIF4G Domain Containing Jen McAuliffe, Penny Mills, Eliza Ho
20 2gnxA Hypothetical Protein LOC144577 Mel, Saurav, Mari, Sam
7 2f6rA Bifunctional coenzyme A synthase (CoA synthase) Rachael Slade, Hayley Thomas, Ben Leahy
13 1zkdA Hypothetical protein LOC55471 isoform 1 Timm, Haresh, Vern


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name protein name keen and available for scholarship
Festia Stefanus N-ethylmaleimide-sensitive factor attachment protein, gamma
Vanessa Baramuli N-ethylmaleimide-sensitive factor attachment protein, gamma
Justine Kuswara N-ethylmaleimide-sensitive factor attachment protein, gamma
Alexander Mulherin GTP_binding protein
Takayuki Hasegawa GTP_binding protein
Scott Allen GTP_binding protein
Jason Cheong N-acetylneuraminic acid phosphatase
YauHeenWai N-acetylneuraminic acid phosphatase
Lim Junxian N-acetylneuraminic acid phosphatase
John Tsai haloacid dehalogenase-like hydrolase domain containing 2
Wilson Chang haloacid dehalogenase-like hydrolase domain containing 2
Kaneez Jafferi haloacid dehalogenase-like hydrolase domain containing 2 yes please
Jen McAuliffe MIF4G Domain Containing
Penny Mills MIF4G Domain Containing
Eliza Ho MIF4G Domain Containing
Mel Hypothetical Protein LOC144577
Saurav Hypothetical Protein LOC144577
Mari Hypothetical Protein LOC144577
Sam Hypothetical Protein LOC144577
Rachael Slade Bifunctional coenzyme A synthase (CoA synthase) Yes Please
Hayley Thomas Bifunctional coenzyme A synthase (CoA synthase)
Ben Leahy Bifunctional coenzyme A synthase (CoA synthase) Yes Please
Timm Hypothetical protein LOC55471 isoform 1
Haresh Hypothetical protein LOC55471 isoform 1
Vern Hypothetical protein LOC55471 isoform 1



--ThomasHuber 13:45, 24 April 2007 (EST)

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