Structure: Difference between revisions

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== sequence==
== Materials & Methods==
        1 gxglalcgaa aqaqekpnfl iiqcdhltqr vvgaygqtqg ctlpidevas rgvifsnayv
1) Protein structural search on PyMOL, NCBI Entrez, InterPro and PDB databases
      61 gcplsqpsra alwsgxxphq tnvrsnssep vntrlpenvp tlgslfsesg yeavhfgkth
* PDB code: 3b5q
      121 dxgslrgfkh kepvakpftd pefpvnndsf ldvgtcedav aylsnppkep ficiadfqnp
2) Comparing protein search with DALI server to identify similiar structures
      181 hnicgfigen agvhtdrpis gplpelpdnf dvedwsnipt pvqyiccshr rxtqaahwne
      241 enyrhyiaaf qhytkxvskq vdsvlkalys tpagrntivv ixadhgdgxa shrxvtkhis
      301 fydextnvpf ifagpgikqq kkpvdhlltq ptldllptlc dlagiavpae kagislaptl
      361 rgekqkkshp yvvsewhsey eyvttpgrxv rgprykythy legngeelyd xkkdpgerkn
      421 lakdpkyski laehralldd yitrskddyr slkvdadprc rnhtpgypsh egpgareilk
      481 rk




== links ==
 
== Results ==
'''PDB'''
 
[[Image:3b5q image PDB.png|thumb|'''Figure 1.0''' Structure of 3b5q]]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
== Discussion ==
 
 
'''Sequence'''
 
>gi|160286517|pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A Resolution
GXGLALCGAAAQAQEKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRA
ALWSGXXPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDXGSLRGFKHKEPVAKPFTD
PEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNF
DVEDWSNIPTPVQYICCSHRRXTQAAHWNEENYRHYIAAFQHYTKXVSKQVDSVLKALYSTPAGRNTIVV
IXADHGDGXASHRXVTKHISFYDEXTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAE
KAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRXVRGPRYKYTHYLEGNGEELYDXKKDPGERKN
LAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREILKRK
 
== Links ==


[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=160286517 Arylsulfatase sequence]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=160286517 Arylsulfatase sequence]
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[[Image:2gfh asym r 500.jpg|thumb|2GFH]]
'''Crystal Structure'''
 
[[Image:protein showing zinc pymol.png|300px|thumb]]
== crystal structure == [[Image:protein showing zinc pymol.png|300px]]

Latest revision as of 01:25, 21 May 2008

Materials & Methods

1) Protein structural search on PyMOL, NCBI Entrez, InterPro and PDB databases

  • PDB code: 3b5q

2) Comparing protein search with DALI server to identify similiar structures


Results

PDB

Figure 1.0 Structure of 3b5q












Discussion

Sequence

>gi|160286517|pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A Resolution GXGLALCGAAAQAQEKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRA ALWSGXXPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDXGSLRGFKHKEPVAKPFTD PEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNF DVEDWSNIPTPVQYICCSHRRXTQAAHWNEENYRHYIAAFQHYTKXVSKQVDSVLKALYSTPAGRNTIVV IXADHGDGXASHRXVTKHISFYDEXTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAE KAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRXVRGPRYKYTHYLEGNGEELYDXKKDPGERKN LAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREILKRK

Links

Arylsulfatase sequence

Human sulfatases: a structural perspective to catalysis

Amino acid residues forming the active site of arylsulfatase A. Role in catalytic activity and substrate binding

Protein structure in PDB


Crystal Structure

Protein showing zinc pymol.png
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