3bsqA Results: Difference between revisions
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'''MSA''' highlited sevlral residues which are very highly conserves ''(figure 1)''. | '''MSA''' highlited sevlral residues which are very highly conserves ''(figure 1)''. | ||
The three dimentional structure was viewed using '''PyMol''' ''(figure 2)''and these conserved residues were marked on the crystal structure. However they were not related to binding sited of Cl and Zn, but buried in the core of the protein within a pocket-like region''(figure 3)''. | The three dimentional structure was viewed using '''PyMol''' ''(figure 2)''and these conserved residues were marked on the crystal structure. However they were not related to binding sited of Cl and Zn, but buried in the core of the protein within a pocket-like region ''(figure 3)''. | ||
All attempts to see the electrostatic nature of this pocket were unsuccessful, due to some technical probloems with '''PyMol'''. | All attempts to see the electrostatic nature of this pocket were unsuccessful, due to some technical probloems with '''PyMol'''. | ||
Structural alignement of arylsulfatase K using '''DALI''' resulted several other sulfatases (figure 4)''. | Structural alignement of arylsulfatase K using '''DALI''' resulted several other sulfatases ''(figure 4)''. | ||
Protein interactions of arylsulfatase K with other proteis were vieved usig the server '''STRING''', which revealed four major hits, depending on XXX and XXX evidence. | Protein interactions of arylsulfatase K with other proteis were vieved usig the server '''STRING''', which revealed four major hits, depending on XXX and XXX evidence. | ||
Revision as of 23:21, 31 May 2008
MSA highlited sevlral residues which are very highly conserves (figure 1).
The three dimentional structure was viewed using PyMol (figure 2)and these conserved residues were marked on the crystal structure. However they were not related to binding sited of Cl and Zn, but buried in the core of the protein within a pocket-like region (figure 3). All attempts to see the electrostatic nature of this pocket were unsuccessful, due to some technical probloems with PyMol.
Structural alignement of arylsulfatase K using DALI resulted several other sulfatases (figure 4).
Protein interactions of arylsulfatase K with other proteis were vieved usig the server STRING, which revealed four major hits, depending on XXX and XXX evidence.
